{ "_id": "6ab4e0393d719c1f84096cc0", "Package": "profrep", "Title": "Profile Repeatability", "Version": "1.0.0", "Authors@R": "c(\nperson(\"Ursula K.\", \"Beattie\",\nemail=\"ursula.beattie@tufts.edu\",\nrole=c(\"cre\", \"aut\", \"cph\"),\ncomment=c(ORCID=\"0000-0002-7131-3712\")\n),\nperson(\"David\", \"Harris\",\nemail=\"drharris115@gmail.com\",\nrole=c(\"aut\", \"cph\")\n),\nperson(\"L. Michael\", \"Romero\",\nemail=\"michael.romero@tufts.edu\",\nrole=c(\"aut\", \"cph\"),\ncomment=c(ORCID=\"0000-0002-8854-8884\")\n),\nperson(\"J. Michael\", \"Reed\",\nemail=\"michael.reed@tufts.edu\",\nrole=c(\"aut\", \"cph\"),\ncomment=c(ORCID=\"0000-0002-3571-2652\")\n),\nperson(\"Zachary R.\", \"Weaver\",\nemail=\"zrweaver447@gmail.com\",\nrole=c(\"aut\", \"cph\"),\ncomment=c(ORCID=\"0000-0001-6314-0690\")\n)\n)", "Description": "Calculates profile repeatability for replicate stress\nresponse curves, or similar time-series data. Profile\nrepeatability is an individual repeatability metric that uses\nthe variances at each timepoint, the maximum variance, the\nnumber of crossings (lines that cross over each other), and the\nnumber of replicates to compute the repeatability score. For\nmore information see Reed et al. (2019)\n.", "License": "MIT + file LICENSE", "URL": "https://ubeattie.github.io/profrep/", "BugReports": "https://github.com/ubeattie/profrep/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown=TRUE)", "RoxygenNote": "7.2.3", "Config/testthat/edition": "3", "LazyData": "true", "VignetteBuilder": "knitr", "Repository": "https://ubeattie.r-universe.dev", "Date/Publication": "2023-12-05 19:29:18 UTC", "RemoteUrl": "https://github.com/ubeattie/profrep", "RemoteRef": "HEAD", "RemoteSha": "6de9e06d64e3690e5b291f55be1efca2388b8804", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-24 08:29:13 UTC", "User": "root" }, "Author": "Ursula K. Beattie [cre, aut, cph] (ORCID:\n),\nDavid Harris [aut, cph],\nL. Michael Romero [aut, cph] (ORCID:\n),\nJ. Michael Reed [aut, cph] (ORCID:\n),\nZachary R. Weaver [aut, cph] (ORCID:\n)", "Maintainer": "Ursula K. Beattie ", "_user": "ubeattie", "_type": "src", "_file": "profrep_1.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/7ec55c6ce6c0818523c0efebee16f4a8b3ed7c4f971b15f9e1b4a82f5652a154", "_filesize": 172737, "_sha256": "7ec55c6ce6c0818523c0efebee16f4a8b3ed7c4f971b15f9e1b4a82f5652a154", "_expires": "2027-01-02T08:32:55.000Z", "_created": "2026-09-24T08:29:13.000Z", "_published": "2026-09-24T08:32:57.185Z", "_jobs": [ { "job": 107555036547, "time": 113, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10797997313" }, { "job": 107555036922, "time": 124, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10797224228" }, { "job": 107555036720, "time": 184, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10798097288" }, { "job": 107555036516, "time": 138, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10797559789" }, { "job": 107554201167, "time": 156, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10797594275" }, { "job": 107555036428, "time": 92, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10797647939" }, { "job": 107555036552, "time": 73, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10797622795" }, { "job": 107555036589, "time": 76, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10797513299" }, { "job": 107555036626, "time": 66, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10798097016" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753", "_status": "success", "_upstream": "https://github.com/ubeattie/profrep", "_commit": { "id": "6de9e06d64e3690e5b291f55be1efca2388b8804", "author": "Zachary R Weaver <94644169+ZacharyRWeaver@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #12 from ubeattie/latest_release\n\nLatest release", "time": 1701804558 }, "_maintainer": { "name": "Ursula K. Beattie", "email": "ursula.beattie@tufts.edu", "login": "ubeattie", "description": "", "uuid": 140201465, "orcid": "0000-0002-7131-3712" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "ubeattie", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "zacharyrweaver", "count": 72, "uuid": 94644169 }, { "user": "ubeattie", "count": 7, "uuid": 140201465 } ], "_userbio": { "uuid": 140201465, "type": "user", "name": "ubeattie", "followers": 0 }, "_downloads": { "count": 193, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/profrep" }, "_devurl": "https://github.com/ubeattie/profrep", "_pkgdown": "https://ubeattie.github.io/profrep/", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/profrep.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/ubeattie/profrep", "_realowner": "ubeattie", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-12-04" } ], "_exports": [ "calculate_crossovers", "clean_data", "do_ordering", "find_next_good_datapoint", "get_vars", "profrep", "retrieve_good_data", "score_dfs", "score_individual_df", "sigmoid" ], "_datasets": [ { "name": "example_two_point_data", "title": "Example Data: Two Point Data", "object": "example_two_point_data", "class": [ "data.frame" ], "fields": [ "Animal", "Time", "SD.DR", "SD.DA", "SD.DC", "SD.DCA", "SD.NR", "SD.NA", "SD.NC", "SD.NCA", "LD.DR", "LD.DA", "LD.DC", "LD.DCA", "LD.NR", "LD.NA", "LD.NC", "LD.NCA", "M.DR", "M.DH", "M.DA", "M.DC", "M.DAC", "M.DH2", "M.NR", "M.NH", "M.NA", "M.NC", "M.NAC", "M.NH2" ], "rows": 10, "table": true, "tojson": true }, { "name": "sparrow_repeatability_three_point", "title": "Example Data: Sparrow Repeatability (3 Point Data)", "object": "sparrow_repeatability_three_point", "class": [ "data.frame" ], "fields": [ "Animal", "TIME", "LD.500", "LD.900", "LD.1300", "LD.1700", "LD.2100", "M.500", "M.900", "M.1300", "M.1700", "M.2100" ], "rows": 36, "table": true, "tojson": true }, { "name": "synthetic_data_four_point", "title": "Example Data: Synthetic 4-Point Data", "object": "synthetic_data_four_point", "class": [ "data.frame" ], "fields": [ "Animal", "TIME", "A", "B", "C", "D" ], "rows": 44, "table": true, "tojson": true } ], "_help": [ { "page": "calculate_crossovers", "title": "Calculate the Number of Crossovers", "topics": [ "calculate_crossovers" ] }, { "page": "clean_data", "title": "Clean Data by Interpolating Missing Values", "topics": [ "clean_data" ] }, { "page": "do_ordering", "title": "Score and Order Data", "topics": [ "do_ordering" ] }, { "page": "example_two_point_data", "title": "Example Data: Two Point Data", "topics": [ "example_two_point_data" ] }, { "page": "find_next_good_datapoint", "title": "What Is the Next Non-Null Data Point?", "topics": [ "find_next_good_datapoint" ] }, { "page": "get_vars", "title": "Calculate Group Variance", "topics": [ "get_vars" ] }, { "page": "profrep", "title": "Perform Profile Repeatability", "topics": [ "profrep" ] }, { "page": "retrieve_good_data", "title": "Retrieve Indices of Non-Missing Data for a Specific Time Point", "topics": [ "retrieve_good_data" ] }, { "page": "score_dfs", "title": "Compute Profile Repeatability Score", "topics": [ "score_dfs" ] }, { "page": "score_individual_df", "title": "Score an Individual Data Frame", "topics": [ "score_individual_df" ] }, { "page": "sigmoid", "title": "Calculates the sigmoid function of the input", "topics": [ "sigmoid" ] }, { "page": "sparrow_repeatability_three_point", "title": "Example Data: Sparrow Repeatability (3 Point Data)", "topics": [ "sparrow_repeatability_three_point" ] }, { "page": "synthetic_data_four_point", "title": "Example Data: Synthetic 4-Point Data", "topics": [ "synthetic_data_four_point" ] } ], "_readme": "https://github.com/ubeattie/profrep/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "profrep.Rmd", "filename": "profrep.html", "title": "profrep", "engine": "knitr::rmarkdown", "headings": [ "Using profrep", "Introduction", "Basic Use: From a CSV" ], "created": "2023-10-10 13:15:43", "modified": "2023-11-13 22:41:20", "commits": 3 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "profrep", "_universes": [ "ubeattie" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-09-24T08:31:09.000Z", "distro": "resolute", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/67a0be13f818957fb1e3d1295fa17b4e19e9a885748db5b95ab4dfed1bacd4d6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0", "date": "2026-09-24T08:31:18.000Z", "distro": "resolute", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/c3569106f9f0ce228ea481be43b271de62c23e2c3821af2a9e28775c2042e213", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0", "date": "2026-09-24T08:31:41.000Z", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/e6e6a9018ebb6caa5cd9977791df4bffd2000038b3e10114f7729a4518f8cc99", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0", "date": "2026-09-24T08:31:11.000Z", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/6496cf43056e39eae224362d66ba6c4d66ce8c9d8e279d7ab4ff031d2f7b9f4b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-09-24T08:31:00.000Z", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/ecae7f50367a4b993f294362cc08010b8f37a40ab88bf4cb58f35d5034c2204f", "status": "success", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-09-24T08:30:20.000Z", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/e2c1de942e0a19001179bd92c719415cc37c08e0af55a1f05aa084b1d5e4a49f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" }, { "r": "4.5.3", "os": "win", "version": "1.0.0", "date": "2026-09-24T08:30:22.000Z", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/b06ca7f50118284d9a8c6e3fa7d1904f1b7a2c91dcc9809d32c2ab564d2d7402", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" }, { "r": "4.6.1", "os": "win", "version": "1.0.0", "date": "2026-09-24T08:30:16.000Z", "commit": "6de9e06d64e3690e5b291f55be1efca2388b8804", "fileid": "https://r2.ropensci.org/f4d7551faac6b21ffd6faa63314fcc5debd126eec16e09ea851f9f35e645d209", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ubeattie/actions/runs/35975246753" } ] }